java.lang.Throwable: Stub index points to a file

[panosdotk]

Describe the bug (*)

A clear and concise description of what the bug is.

java.lang.Throwable: Stub index points to a file (file = file:///Users/panos/_DeveloperArea/magento-dev/src/dev/tests/static/framework/tests/unit/testsuite/Magento/PhpStan/Reflection, file type = com.intellij.openapi.fileTypes.UnknownFileType@7ccb615c, indexed file type = null) without indexed stub tree; indexing stamp = null, can have stubs = false, actual stub count = 0
	at com.intellij.openapi.diagnostic.Logger.error(Logger.java:370)
	at com.intellij.psi.stubs.StubProcessingHelper.retrieveStubIdList(StubProcessingHelper.java:41)
	at com.intellij.psi.stubs.StubIndexEx.lambda$processElements$6(StubIndexEx.java:207)
	at java.base/java.util.concurrent.ConcurrentHashMap.computeIfAbsent(ConcurrentHashMap.java:1708)
	at com.intellij.psi.stubs.StubIndexEx.processElements(StubIndexEx.java:206)
	at com.intellij.psi.stubs.StubIndex.getElements(StubIndex.java:102)
	at com.intellij.psi.stubs.StubIndex.getElements(StubIndex.java:90)
	at com.jetbrains.php.PhpIndexImpl.getElements(PhpIndexImpl.java:746)
	at com.jetbrains.php.PhpIndexImpl.getByName(PhpIndexImpl.java:1183)
	at com.jetbrains.php.PhpIndexImpl.getByFQN(PhpIndexImpl.java:1160)
	at com.jetbrains.php.PhpIndexImpl.getByFqnCacheAware(PhpIndexImpl.java:1241)
	at com.jetbrains.php.PhpIndexImpl.getClassesByFQNInternal(PhpIndexImpl.java:1236)
	at com.jetbrains.php.PhpIndexImpl.getAnyByFQN(PhpIndexImpl.java:1275)
	at com.magento.idea.magento2plugin.reference.provider.PhpClassReferenceProvider.getReferencesByElement(PhpClassReferenceProvider.java:80)
	at com.magento.idea.magento2plugin.reference.provider.CompositeReferenceProvider.getReferencesByElement(CompositeReferenceProvider.java:30)
	at com.intellij.psi.impl.source.resolve.reference.ReferenceProvidersRegistryImpl.getReferences(ReferenceProvidersRegistryImpl.java:182)
	at com.intellij.psi.impl.source.resolve.reference.ReferenceProvidersRegistryImpl.mapNotEmptyReferencesFromProviders(ReferenceProvidersRegistryImpl.java:163)
	at com.intellij.psi.impl.source.resolve.reference.ReferenceProvidersRegistryImpl.doGetReferencesFromProviders(ReferenceProvidersRegistryImpl.java:142)
	at com.intellij.psi.impl.source.resolve.reference.ReferenceProvidersRegistry.lambda$getReferencesFromProviders$0(ReferenceProvidersRegistry.java:45)
	at com.intellij.psi.util.CachedValuesManager$1.compute(CachedValuesManager.java:158)
	at com.intellij.psi.impl.PsiCachedValueImpl.doCompute(PsiCachedValueImpl.java:37)
	at com.intellij.util.CachedValueBase.lambda$getValueWithLock$3(CachedValueBase.java:240)
	at com.intellij.util.CachedValueBase.computeData(CachedValueBase.java:43)
	at com.intellij.util.CachedValueBase.lambda$getValueWithLock$4(CachedValueBase.java:240)
	at com.intellij.openapi.util.RecursionManager$1.computePreventingRecursion(RecursionManager.java:110)
	at com.intellij.openapi.util.RecursionGuard.doPreventingRecursion(RecursionGuard.java:27)
	at com.intellij.openapi.util.RecursionManager.doPreventingRecursion(RecursionManager.java:65)
	at com.intellij.util.CachedValueBase.getValueWithLock(CachedValueBase.java:241)
	at com.intellij.psi.impl.PsiCachedValueImpl.getValue(PsiCachedValueImpl.java:27)
	at com.intellij.util.CachedValuesManagerImpl.getCachedValue(CachedValuesManagerImpl.java:69)
	at com.intellij.psi.util.CachedValuesManager.getCachedValue(CachedValuesManager.java:155)
	at com.intellij.psi.util.CachedValuesManager.getCachedValue(CachedValuesManager.java:121)
	at com.intellij.psi.impl.source.resolve.reference.ReferenceProvidersRegistry.getReferencesFromProviders(ReferenceProvidersRegistry.java:43)
	at com.intellij.psi.impl.source.xml.XmlAttributeValueImpl.getReferences(XmlAttributeValueImpl.java:81)
	at com.intellij.psi.impl.source.xml.XmlAttributeValueImpl.getReferences(XmlAttributeValueImpl.java:96)
	at com.intellij.codeInsight.highlighting.HyperlinkAnnotator.annotate(HyperlinkAnnotator.java:42)
	at com.intellij.codeInsight.daemon.impl.DefaultHighlightVisitor.runAnnotators(DefaultHighlightVisitor.java:130)
	at com.intellij.codeInsight.daemon.impl.DefaultHighlightVisitor.visit(DefaultHighlightVisitor.java:107)
	at com.intellij.codeInsight.daemon.impl.GeneralHighlightingPass.runVisitors(GeneralHighlightingPass.java:360)
	at com.intellij.codeInsight.daemon.impl.GeneralHighlightingPass.lambda$collectHighlights$7(GeneralHighlightingPass.java:291)
	at com.intellij.codeInsight.daemon.impl.GeneralHighlightingPass.analyzeByVisitors(GeneralHighlightingPass.java:320)
	at com.intellij.codeInsight.daemon.impl.GeneralHighlightingPass.lambda$analyzeByVisitors$8(GeneralHighlightingPass.java:323)
	at com.intellij.codeInsight.daemon.impl.analysis.XmlHighlightVisitor.analyze(XmlHighlightVisitor.java:584)
	at com.intellij.codeInsight.daemon.impl.GeneralHighlightingPass.analyzeByVisitors(GeneralHighlightingPass.java:323)
	at com.intellij.codeInsight.daemon.impl.GeneralHighlightingPass.lambda$analyzeByVisitors$8(GeneralHighlightingPass.java:323)
	at com.intellij.codeInsight.daemon.impl.DefaultHighlightVisitor.analyze(DefaultHighlightVisitor.java:92)
	at com.intellij.codeInsight.daemon.impl.GeneralHighlightingPass.analyzeByVisitors(GeneralHighlightingPass.java:323)
	at com.intellij.codeInsight.daemon.impl.GeneralHighlightingPass.collectHighlights(GeneralHighlightingPass.java:286)
	at com.intellij.codeInsight.daemon.impl.GeneralHighlightingPass.collectInformationWithProgress(GeneralHighlightingPass.java:234)
	at com.intellij.codeInsight.daemon.impl.ProgressableTextEditorHighlightingPass.doCollectInformation(ProgressableTextEditorHighlightingPass.java:95)
	at com.intellij.codeHighlighting.TextEditorHighlightingPass.collectInformation(TextEditorHighlightingPass.java:57)
	at com.intellij.codeInsight.daemon.impl.PassExecutorService$ScheduledPass.lambda$doRun$1(PassExecutorService.java:390)
	at com.intellij.platform.diagnostic.telemetry.helpers.TraceKt.runWithSpanIgnoreThrows(trace.kt:77)
	at com.intellij.platform.diagnostic.telemetry.helpers.TraceUtil.runWithSpanThrows(TraceUtil.java:24)
	at com.intellij.codeInsight.daemon.impl.PassExecutorService$ScheduledPass.lambda$doRun$2(PassExecutorService.java:386)
	at com.intellij.openapi.application.impl.ApplicationImpl.tryRunReadAction(ApplicationImpl.java:1133)
	at com.intellij.codeInsight.daemon.impl.PassExecutorService$ScheduledPass.lambda$doRun$3(PassExecutorService.java:377)
	at com.intellij.openapi.progress.impl.CoreProgressManager.lambda$executeProcessUnderProgress$13(CoreProgressManager.java:604)
	a

To Reproduce (*)

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4. See error

Expected behavior (*)

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Screenshots

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Please complete the following information: (*)

• OS: Mac OS X 14.0
• PhpStorm/Intellij version: 2023.2.3
• Plugin Version: 5.1.1

Additional context

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[m2-assistant]

Hi @panosdotk. Thank you for your report.
To speed up processing of this issue, make sure that you provided sufficient information.
Add a comment to assign the issue: @magento I am working on this

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