v1.5.0

1.5.0

• actually remove --force from mamba|conda commands

v1.4.0

1.4.0

• added:
  • bactopia-pubmlst-setup to setup PubMLST REST API connections
  • bactopia-pubmlst-build to build PubMLST databases compatible with mlst Bactopia Tool

v1.3.0

1.3.0

• replace conda/mamba --force with simple rm -rf
  • latest version of mamba removed --force

v1.2.1

1.2.1

• added parallel gzipping of assemblies in bactopia-atb-formatter
• added size estimation to bactopia-atb-formatter output

v1.2.0

1.2.0

• added bactopia-atb-downloader to download All-the-Bacteria assemblies

v1.1.1

1.1.1

• fixed bactopia-summary not working with Bakta annotations
• added support for alternative extensions in bactopia-atb-formatter @nickjhathaway 🎉

v1.10.0

1.10.0

• rework bactopia-summary for new AMRFinder+ outputs

v1.0.9

1.0.9

• added bactopia-atb-formatter to format All-the-Bacteria assemblies for Bactopia

v1.0.8

1.0.8

• Fixed bactopia-prepare usage of --prefix not working

v1.0.7

1.0.7

• Fixed bactopia-search not including header name in accessions.txt
• Added --hybrid and --short-polish to bactopia-prepare