Skip to content

Issues: phylovi/bito

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

55 Open 210 Closed
55 Open 210 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Add Dockerfile
#485 opened Apr 7, 2024 by davidrich27
@davidrich27
DAGStorage throws error where line references a line outside of range.
#479 opened Aug 10, 2023 by davidrich27
SubsplitDAG: Add map for quick lookup of parent and child nodes.
#478 opened Jul 25, 2023 by davidrich27
@davidrich27
TPEngine: Assign an edge's neighbors based on "edge heuristic" instead of "subsplit heuristic".
#471 opened Mar 7, 2023 by davidrich27
@davidrich27
2
TPEngine: Add Rescaling to Likelihood Computations
#462 opened Aug 12, 2022 by davidrich27
yet more iteration over unordered maps leading to inconsistent behavior
#455 opened Jul 9, 2022 by matsen
parsimony 2 Sankoff on DAG
#450 opened Jun 24, 2022 by tanviganapathy
@tanviganapathy
NNI Engine: Top-Pruning
#440 opened May 25, 2022 by davidrich27
@davidrich27 @chrisjenningsshaffer
5
SubsplitDAG: Export/Import Rimu-compatible JSON file
#431 opened Apr 21, 2022 by davidrich27
1
@davidrich27
NNI Engine: NNI Priors
#430 opened Apr 13, 2022 by davidrich27
@hrnasif @davidrich27
SubsplitDAG: Remove node pair.
#428 opened Apr 1, 2022 by davidrich27
1
@davidrich27
SubsplitDAG: Faster method for finding parents/children of new nodes.
#427 opened Apr 1, 2022 by davidrich27
@davidrich27
1
Fix Doctest issues with newer GCC compilers.
#421 opened Mar 17, 2022 by davidrich27
MrBayes Nexus tree parsing fails with an uninformative error
#406 opened Feb 5, 2022 by matsen
replace use of std::function with templates
#401 opened Jan 26, 2022 by matsen
@ognian-
Flesh out GitHub Actions CI
#361 opened Sep 2, 2021 by 4ment
1
@ognian- @davidrich27
4
Rename subsplit DAG elements
#350 opened Jul 31, 2021 by matsen
@davidrich27
2
Use the DAG in the SBN instances
#348 opened Jul 26, 2021 by matsen
@ognian-
9
Allow other clock models like relaxed clocks
#338 opened Mar 22, 2021 by 4ment
1
Refactor PLV handling to be more isolated and dynamic
#328 opened Feb 23, 2021 by matsen
4
Replace UnrootedPhyloGradient and RootedPhyloGradient with PhyloGradient; add flexible gradient requests
#324 opened Feb 15, 2021 by 4ment
Optimization of classical likelihood in GP
#322 opened Feb 6, 2021 by matsen
Further tests and code for TidySubsplitDAG
#321 opened Feb 5, 2021 by matsen
3 tasks
Rename RootedTree to TimeTree
#318 opened Feb 1, 2021 by matsen
Brent optimization tries unreasonable values
#317 opened Feb 1, 2021 by matsen
@hrnasif @davidrich27
2
ProTip! no:milestone will show everything without a milestone.